TOXIN NEUTRALIZATION TO FUNCTIONALLY DISSECT INTERBACTERIAL ANTAGONISM IN THE GUT MICROBIOME - ABSTRACT DEC…
Federal financial assistance recorded from USAspending. This is not a procurement contract.
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ASST_NON_F32AI164853_075 · UNIVERSITY OF WASHINGTON · Department of Health and Human Services
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- Assistance award identifier
- ASST_NON_F32AI164853_075
- FAIN
- F32AI164853
- Recipient
- UNIVERSITY OF WASHINGTON
- Awarding agency
- Department of Health and Human Services
- Funding agency
- Department of Health and Human Services
- Assistance listing (CFDA)
- 93.855
- Total obligated
- $212,787
- Period
- Sep 1, 2022 – Aug 31, 2025
- Fiscal year
- 2022
- Place of performance state
- WA
- Source file
- FY2022_All_Assistance_Full_20261006.zip
Description
TOXIN NEUTRALIZATION TO FUNCTIONALLY DISSECT INTERBACTERIAL ANTAGONISM IN THE GUT MICROBIOME - ABSTRACT DECADES OF RESEARCH HAVE REVEALED THAT THE COMPOSITION OF THE HUMAN GUT MICROBIOME DIRECTLY IMPACTS HUMAN HEALTH, YET WE STILL DO NOT UNDERSTAND THE MECHANISMS UNDERLYING FORMATION AND MAINTENANCE OF THIS COMPLEX COMMUNITY. COUNTERINTUITIVELY, INCREASING EVIDENCE SUGGESTS THAT COMPETITIVE INTERACTIONS PLAY A ROLE IN MAINTAINING COMMUNITY STABILITY. WHILE GENES ENCODING COMPONENTS OF DIVERSE SYSTEMS INVOLVED IN INTERBACTERIAL ANTAGONISM ARE WIDESPREAD IN HUMAN GUT METAGENOMES, THE SPECIFIC ANTAGONISTIC INTERACTIONS OCCURING IN SITU REMAIN ELUSIVE. ONE OF THE PATHWAYS MEDIATING INTERBACTERIAL ANTAGONISM IS THE ESX SECRETION SYSTEM, WHICH IS CONSERVED IN TWO PROMINENT GUT PHYLA, FIRMICUTES AND ACTINOBACTERIA. WHILE THIS PATHWAY HAS BEEN SHOWN TO MEDIATE CONTACT-DEPENDENT INTERBACTERIAL ANTAGONISM BY A LIMITED NUMBER OF GRAM-POSITIVE SPECIES IN VITRO, MANY QUESTIONS REMAIN ABOUT ITS PHYSIOLOGICAL FUNCTION. ANTIBACTERIAL TOXINS SECRETED BY THE ESX MACHINERY ARE PRESENT THROUGHOUT HUMAN GUT METAGENOMES, SUGGESTING THAT ESX-MEDIATED ANTAGONISM COULD OCCUR IN THIS COMMUNITY. THESE FINDINGS LED ME TO PROPOSE TO IDENTIFY THE TARGETS OF ESX-MEDIATED INTERBACTERIAL ANTAGONISM IN A MODEL NATURAL COMMUNITY, THE MURINE GUT MICROBIOME. TO ACCOMPLISH THIS GOAL, I WILL TAKE ADVANTAGE OF THE FACT THAT BACTERIA EXPRESS COGNATE IMMUNITY GENES TO PREVENT SELF-INTOXICATION BY SECRETED TOXINS. IN AIM 1 OF MY PROPOSED STUDIES, I WILL USE BIOINFORMATICS AND IN VITRO FUNCTIONAL ASSAYS TO IDENTIFY ESX TOXIN AND IMMUNITY GENES ENCODED IN A MODEL MURINE GUT METAGENOME DERIVED FROM WILD-CAUGHT MICE. MY PRELIMINARY FINDINGS INDICATE AT LEAST TWO ANTIBACTERIAL ESX TOXINS ARE ENCODED IN THIS NATURAL GUT MICROBIOME. IN AIM 2, I DESCRIBE AN IN SITU CONJUGATION STRATEGY TO DELIVER THE IMMUNITY GENES IDENTIFIED IN AIM 1 TO ALL MEMBERS OF THE MURINE GUT COMMUNITY. I HYPOTHESIZE THAT EXPRESSION OF IMMUN