High Resolution Parallelized Imaging of Freely Swimming Zebrafish with a Gigapixel Microscope

Significance High throughput optical microscopy is currently transforming the research fields of genetics drug discovery and neuroscience Large scale optical assays now routinely use thousands of high resolution images to offer critical insights into the human body our brain and the diseases that affect us Todayandapos s optical microscopes however are still far from ideal Due to challenges with large lens design no standard microscope can capture more than megapixels per image snapshot which makes it impossible to simultaneously image at cellular resolution over a multi centimeter viewing area field of view FOV For screening and monitoring zebrafish in vivo this resolution FOV tradeoff is a critical bottleneck each organism must be constrained or paralyzed to image at high resolution freely swimming organisms can only be viewed at low resolution and no setups yet can monitor in parallel multiple swimming zebrafish at cellular resolution Proposal Optical Wavefront Laboratories LLC OWL will develop and test a new microscope to overcome these limitations It will capture sub cellular resolution images over an cm area an entire large petri dish This unique micro camera array microscope MCAM is designed to form gigapixel images X more pixels per image than the top competing microscopes This architecture can directly scale into the multi gigapixel regime The MCAM will significantly improve the efficiency of high throughput microscope screening reduce the complexity of current setups and enable completely new biological experiments e g SA SA Finalize MCAM hardware OWL will complete a prototype MCAM device currently under construction consisting of micro camera units and associated electronics for m resolution imaging across an cm FOV at frame per second Unlike any competing technology our unique optical design will produce gigapixel scale snapshot microscope images Milestone Completed MCAM hardware to deliver image data to a desktop computer at gigapixels sec SA Develop MCAM software A software program will transform the data captured by the MCAM system into standard digital images The software program will also allow the end user to control and adjust basic imaging parameters exposure time contrast and frame rate Milestone A standard Windows desktop computer program to directly control the MCAM and produce and save images bmp or jpg format gigapixels image from an attached MCAM device SA Test the MCAMandapos s effectiveness in imaging freely swimming zebrafish Working with the Engert Lab at Harvard University OWL will demonstrate the MCAMandapos s benefits in a behavioral imaging experiment to measure the visual function of andgt freely swimming zebrafish larval stage simultaneously across an cm swim arena at m resolution Milestones Confirm the MCAM accurately measures eye position for stationary zebrafish larvae embedded in agar Demonstrate the MCAM can measure eye position from freely swimming zebrafish across an cm swim area continuously measurement sec per larvae Results will be compared to two top of the line single lens microscopes After successfully demonstrating the MCAM provides X more pixels per image than current microscopes OWL plans to use the new device for non invasive and parallelized in vivo fluorescent imaging of neural activity in multiple freely swimming zebrafish at video frame rates This will be the subject of a Phase II proposal Current microscopes cannot form images that offer cellular scale resolution over an area larger than a few square centimeters which fundamentally limits our ability to monitor the detailed movements of living systems In this project Optical Wavefront Laboratories LLC OWL will develop a new micro camera array microscope MCAM to overcome these limitations and offer cellular level detail over an area the size of a large petri dish We will finalize the production of an MCAM prototype capable of m resolution imaging over an cm area and apply it to monitor the visual system of multiple freely swimming zebrafish in parallel at cellular resolution for the first time !