Selenium-derivatized New Reagents for Nucleic Acid X-ray Crystallography

DESCRIPTION provided by applicant There are growing demands for D structure determination of nucleic acids and their protein complexes for understanding disease molecule level mechanisms and discovering innovative drugs X ray crystallography is one of the most direct and powerful tools for structure determination of these macromolecules and complexes However the crystallization and phase determination two long standing and bottle neck problems have largely slowed down structural determination of new structures and folds Therefore it is of tremendous value to develop novel technologies that allow the crystallization facilitation and phase determination Recently the PIandapos s group has pioneered and successfully demonstrated a novel derivatization strategy via replacement of oxygen of nucleic acids with selenium Se Their research is based on their central hypothesis that since oxygen and selenium are in the same elemental family selenium can be used to stably replace oxygen of nucleic acids atom specifically without causing significant perturbation We have successfully demonstrated that their Se derivatized nucleic acids SeNA can be used to solve the phase problem Furthermore we have discovered that the atom specific Se derivatization can largely facilitate crystallization of DNAs RNAs and their complexes with proteins Therefore the SeNA strategy has great potential to provide novel and rational solutions to these two long standing problems leading to valuable products and services Though we have already synthesized several Se derivatized phosphoramidites and triphosphates the Se building block reagents the relatively low synthetic scales and inefficient purification protocols limit them to synthesizea small number and quantity of the Se RNAs and Se DNAs the Se oligonucleotide nucleic acid reagents for crystallization phase determination and structure andamp function characterizations The synthesis scales largely limit applications of the novel reagents and technologies though we have successfully completed STTR Phase I project In this Phase II research project we plan to increase the Se phosphoramidite synthesis to tens of grams in scale gram each and the Se triphosphate synthesis to gram scale gram each These are times larger than their current synthetic scales Our primary objectives are to achieve larger scale synthesis of the Se building blocks and Se DNAs andamp Se RNAs and to facilitate crystallization and phase andamp structure determination of nucleic acids and their protein complexes via the Se derivatizations Ample preliminary results strongly support feasibility of the proposed work and the team has extensive expertise in the proposed research areas Our long term goal is to fully establish standard and convenient strategies for rational crystallization facilitation and phase andamp structure determination of nucleic acids via the Se derivatizations Our novel Se technologies will service the customers in structure determination of nucleic acids and their complexes with proteins and small molecules for discovering new drugs and biology PUBLIC HEALTH RELEVANCE Selenium derivatized nucleic acids can facilitate nucleic acid and protein structure determination by X ray crystallography for discovering novel drug targets and disease treating drugs