A New Rapid DNA Platform for Neonatal Sepsis Diagnostics

DESCRIPTION provided by applicant Neonatal sepsis causes over one million death per year worldwide and to of infants treated with antibiotics die despite the treatment with higher rates occurring in low income countries Rapid diagnosis of sepsis in NICUs Neonatal Intensive Care Units is crucial for implementing a timely treatment Because sepsis is a life threatening medical emergency a large proportion of infants receive treatment with potent systemic antibiotics that can adversely lead to destruction of the infantandapos s normal gastrointestinal flora and the risk of becoming colonized with drug resistant microorganisms Blood culturing is used as the gold standard for neonatal diagnosis of sepsis however the samples are returned in to days which often does not provide timely results for neonatal sepsis cases Typical neonatal patients are weighing grams or less and their total blood volume may be as low as mL thus the iatrogenic blood loss for premature babies may represent up to of total blood loss due to phlebotomy New point of care methods with faster detection time and using smaller amounts of sample are urgently needed Molecular assays based on DNA specificity for sepsis pathogens represent a promising diagnostic tool for early identification of bacteremia However today of hospitals in USA cannot perform DNA analysis and samples are sent to the centralized reference labs with the response time of days The current point of care diagnostics are mostly based on the real time PCR methods that are limited by the number of colors for detecting multiple organisms maximum or by the high price of the instrument or assay cost This project introduces a new point of care POC rapid method for DNA RNA diagnostics that will approach total assay turn around time of min and that is capable of using very small sample volumes as low as microliters compatible with the neonatal sepsis detection Multiplexed identification of the neonatal sepsis pathogens is enable using the microarray approach In addition a number of innovations are offered in the project that will bring a fold decrease in the cost of instrumentation and cartridges compared to the commercialized platforms The platform also offers a unique new qualitative parameter in DNA RNA diagnostics that will enable integration of data for both the length of the nucleic acids as well as it will preserve the strand specificity e g important in alternative splicing mechanisms The assay development in the Phase I will focus on representative neonatal sepsis pathogens and will establish the basic platform and cartridge prototypes and will provide a thorough validation of the assays developed using de identified archived clinical samples PUBLIC HEALTH RELEVANCE Neonatal sepsis and or bacteremia is a life threatening medical emergency for infants in the Rapid diagnosis of sepsis in NICUs Neonatal Intensive Care Units and cause over one million deaths per year worldwide Another problem is the large volume of blood withdrawn for diagnosis critically affecting neonates New point of care methods with faster detection time and using smaller amounts of sample are urgently needed This project introduces a highly innovative point of care POC method for diagnostics of neonatal sepsis that will approach total assay turn around time of min and that is capable of using very small sample volumes as low as microliters compatible with the neonatal sepsis detection The platform will find broad applications in the point of care diagnostics of emergent pandemic and infectious diseases