A Metagenomic Platform to Identify Amphotericin B Analogs

DESCRIPTION provided by applicant Amphotericin B plays a critical role in the clinical treatment of life threatening systemic fungal infections It is often considered the gold standard drug of choice in these instances due to its broad spectrum efficacy and the lack of alternatives However amphotericin B is also well known for its severe and potentially lethal side effects including severe nephrotoxicity Doctors are often left with the difficult choice of balancing the risk of infection with the risk of treatment A number of strategies have been employed to decrease nephrotoxicity of amphotericin B including but not limited to generating glycosylated derivatives at a fixed position to improve solubility purifying the analogs more stringently and creating liposomal formulations These efforts have met with limited success decreasing toxicity to allow for longer treatment regimens but also showing considerable different pharmokinetic characteristics compared to standard amphotericin B Strikingly medicinal chemistry has not had much success altering the characteristics of amphtotericin B This is largely true because there are few positions in polyene natural products that are accessible to traditional medicinal chemistry Still the few published studies that generate even minor chemical modifications of the core scaffold demonstrate that it is possible to dramatically alter the activity and binding specificity of the compound supporting the possibility that the antifungal activity of amphoterici B and its toxicity to humans can be decoupled This would be of enormous value to the infectious disease field Radiant Genomics believes that the enormous diversity of natural product gene clusters that can be identified through a combination of bioinformatics and next generation sequencing of metagenomes and individual organisms can now be mined to provide candidate natural amphotericin analogs that may have decreased toxicity while maintaining its antifungal properties These natural analogs will have modifications and structural changes in the core amphotericin B scaffold that are impossible to duplicate through synthetic medical chemistry Successful production and characterization of a range of natural amphotericin analogs will provide strong proof of concept that the Radiant Genomics natural product discovery platform can allow scientists to quickly interrogate the natural diversity surrounding a targeted natural product an impossibility using traditional natural product discovery methods and would revolutionize the field of natural product discovery A less toxic version of amphotericin B would be primed to become the standard treatment for all systemic fungal infections PUBLIC HEALTH RELEVANCE The discovery of nontoxic polyene antifungals would represent a major advance in the battle against nosocomial fungal infectious disease This proposal presents a novel high throughput strategy for the discovery of amphotericin B analogs in the service of discovering new antifungals We propose to apply our platform to discover and perform first order functional assays with novel amphotericin B analogs in this Phase I proposal